scmorph.tl.slingshot

scmorph.tl.slingshot(adata, cluster_labels='leiden', start_clus=None, end_clus=None, n_comps=10)

Trajectory inference using Slingshot

Parameters:

adata AnnData

AnnData object

cluster_labels str (default: 'leiden')

Column name in obs defining clusters

start_clus int | None (default: None)

Start cluster label

end_clus int | None (default: None)

End cluster label[s]

n_comps int (default: 10)

Number of principal components to use for trajectory inference. Default 10

Return type:

None

Returns:

AnnData object is modified in-place with trajectory information added to .obsm and .uns