scmorph.pl.cumulative_density

scmorph.pl.cumulative_density(adata, x, layer='X', color=None, n_col=3, xlim=None, xlabel=None, show=True, **kwargs)

Plot cumulative densities of variables in AnnData

Parameters:

adata AnnData

AnnData object

x int | str | list[int | str]

Name or index of variable(s) to plot

layer str (default: 'X')

Where to find values for the variable. Useful if you want to plot “pca” or “umap” values.

color str | None (default: None)

Variable in “obs” to color by

n_col int (default: 3)

Number of columns to facet by

xlim tuple[float, float] | None (default: None)

Limits of x-axis

xlabel str | None (default: None)

Label for x-axis

show bool (default: True)

Show the plot

kwargs Any

Other arguments passed to FacetGrid

Return type:

FacetGrid

Returns:

Plots of cumulative densities of variables in AnnData