scmorph.qc.qc_images

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scmorph.qc.qc_images#

scmorph.qc.qc_images(adata, qc, classifier=None, passing_label=1, copy=False)[source]#

Perform cell-QC based on image metrics, if needed using a classifier and a subset of labeled images.

Parameters:
adata AnnData

AnnData object with single-cell data.

qc AnnData

AnnData object with image-level data.

classifier None | _Classifier (default: None)

Classifier to use for prediction. If None, will use the LASSO classifier.

passing_label int (default: 1)

Label to use for passing images.

copy bool (default: False)

Return a copy instead of writing to adata.

Return type:

AnnData

Returns:

adata

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