scmorph.io.make_AnnData

scmorph.io.make_AnnData(df, meta_cols=None, feature_delim='_')

Make annotated data matrix from DataFrame

Parameters:

df DataFrame

Phenotypic measurements, e.g. derived from CellProfiler

meta_cols list[str] | None (default: None)

Names of metadata columns. None for automatic detection.

feature_delim str (default: '_')

Character delimiting feature names

Return type:

AnnData

Returns:

Annotated data matrix