scmorph.qc.read_image_qc

scmorph.qc.read_image_qc(filename, meta_cols=None, label_col='Image_Metadata_QClabel', sep=',', feature_delim='_')

Read image metrics from csv file

Note that you will manually have to add a labeled column into the file.

Parameters:

filename str

Path to .csv file

meta_cols list[str] | None (default: None)

Names of metadata columns. None for automatic detection.

label_col str (default: 'Image_Metadata_QClabel')

Column name of column containing labels

sep str (default: ',')

Column deliminator

feature_delim str (default: '_')

Character delimiting feature names

Return type:

AnnData

Returns:

adata