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scmorph - Home
  • API
    • Reading and writing data: io
      • scmorph.io.read
      • scmorph.io.read_cellprofiler_csv
      • scmorph.io.read_cellprofiler_batches
      • scmorph.io.read_sql
      • scmorph.io.make_AnnData
      • scmorph.io.split_feature_names
    • Quality Control: qc
      • scmorph.qc.filter_outliers
      • scmorph.qc.qc_images_by_dissimilarity
      • scmorph.qc.count_cells_per_group
    • Preprocessing: pp
      • scmorph.pp.drop_na
      • scmorph.pp.scale
      • scmorph.pp.scale_by_batch
      • scmorph.pp.remove_batch_effects
      • scmorph.pp.select_features
      • scmorph.pp.kruskal_test
      • scmorph.pp.kruskal_filter
      • scmorph.pp.aggregate
      • scmorph.pp.aggregate_ttest
      • scmorph.pp.tstat_distance
      • scmorph.pp.aggregate_pc
      • scmorph.pp.aggregate_mahalanobis
      • scmorph.pp.pca
      • scmorph.pp.neighbors
      • scmorph.pp.umap
    • Visualization: pl
      • scmorph.pl.pca
      • scmorph.pl.umap
      • scmorph.pl.cumulative_density
      • scmorph.pl.ridge_plot
    • Analysis tools: tl
      • scmorph.tl.get_ks
      • scmorph.tl.slingshot
      • scmorph.tl.test_common_trajectory
      • scmorph.tl.test_differential_differentiation
      • scmorph.tl.test_differential_progression
    • Datasets: datasets
      • scmorph.datasets.rohban2017
      • scmorph.datasets.rohban2017_minimal
      • scmorph.datasets.rohban2017_imageQC
      • scmorph.datasets.rohban2017_minimal_csv
  • Tutorials
    • Basic workflows
      • Image QC
      • Batch effects
      • Feature selection
      • Hit calling
    • Explainer notebooks
      • Comparison of batch effect correction techniques
      • Comparison of correlation coefficients
  • Changelog
  • Contributing guide
  • Community
  • References
  • .md

Tutorials

Contents

  • Basic workflows
  • Explainer notebooks

Tutorials#

Basic workflows#

  • Basic workflows
    • Image QC
    • Batch effects
    • Feature selection
    • Hit calling

Explainer notebooks#

  • Explainer notebooks
    • Comparison of batch effect correction techniques
    • Comparison of correlation coefficients

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scmorph.datasets.rohban2017_minimal_csv

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Basic workflows

Contents
  • Basic workflows
  • Explainer notebooks

By Jesko Wagner

© Copyright 2025, Jesko Wagner.