scmorph.tl.test_differential_differentiation

scmorph.tl.test_differential_differentiation(adata, conditions, all_pairs=True, pairwise=True)

Test for differential differentiation using condiments’ differentiationTest

Parameters:

adata AnnData

AnnData object

conditions Series | ndarray

Column name in obs defining conditions

all_pairs bool (default: True)

Test all pairs of conditions.

pairwise bool (default: True)

Test all pairs independently.

Return type:

None

Returns:

AnnData object is modified in-place with differential differentiation test results added to .uns