scmorph.tl.test_differential_progression

scmorph.tl.test_differential_progression(adata, conditions, all_pairs=True, lineages=True)

Test for differential progression using condiments’ progressionTest

Parameters:

adata AnnData

AnnData object

conditions Series | ndarray

Column name in obs defining conditions

all_pairs bool (default: True)

Test all pairs of conditions.

lineages bool (default: True)

Test all lineages independently.

Return type:

None

Returns:

AnnData object is modified in-place with differential progression test results added to .uns