scmorph.pl.ridge_plot

scmorph.pl.ridge_plot(adata, x, y, layer='X', n_col=1, show=True, **kwargs)

Plot features as ridge plot.

Helps to distinguish the distribution of a feature across different categories, such as plates.

Parameters:

adata AnnData

Annotated data matrix.

x str

Name of column containing feature values.

y str

Name of column containing category values.

layer str (default: 'X')

Where to find values for the variable. Useful if you want to plot “pca” or “umap” values.

n_col int (default: 1)

How many columns to plot over.

show default: True

Whether to show the plot.

kwargs Any

Other arguments passed to seaborn.FacetGrid.

Return type:

FacetGrid

Returns:

A ridge plot with categories split out and colored by.