scmorph.qc.qc_images

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scmorph.qc.qc_images#

scmorph.qc.qc_images(adata, qc, classifier=None, passing_label=1, copy=False)#

Perform cell-QC based on image metrics, if needed using a classifier and a subset of labeled images.

Parameters:

  • adata (AnnData) – AnnData object with single-cell data.

  • qc (AnnData) – AnnData object with image-level data.

  • classifier (Optional[_Classifier] (default: None)) – Classifier to use for prediction. If None, will use the LASSO classifier.

  • passing_label (int (default: 1)) – Label to use for passing images.

  • copy (bool (default: False)) – Return a copy instead of writing to adata.

Return type:

AnnData

Returns:

adata

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