scmorph.pl.ridge_plot

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scmorph.pl.ridge_plot#

scmorph.pl.ridge_plot(adata, x, y, layer='X', n_col=1, **kwargs)#

Plot features as ridge plot.

Helps to distinguish the distribution of a feature across different categories, such as plates.

Parameters:

  • adata (AnnData) – Annotated data matrix.

  • x (str) – Name of column containing feature values.

  • y (str) – Name of column containing category values.

  • layer (str (default: 'X')) – Where to find values for the variable. Useful if you want to plot “pca” or “umap” values.

  • n_col (int (default: 1)) – How many columns to plot over.

  • kwargs (Any) – Other arguments passed to seaborn.FacetGrid.

Return type:

FacetGrid

Returns:

A ridge plot with categories split out and colored by.

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