References#
Michael B. Cole, Davide Risso, Allon Wagner, David DeTomaso, John Ngai, Elizabeth Purdom, Sandrine Dudoit, and Nir Yosef. Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq. Cell Systems, 8(4):315–328.e8, April 2019. doi:10/gf7msv.
missing journal in LinHan2023
Leland McInnes, John Healy, and James Melville. Umap: uniform manifold approximation and projection for dimension reduction. 2018. URL: https://arxiv.org/abs/1802.03426, doi:10.48550/ARXIV.1802.03426.
Fabian Pedregosa, Gaël Varoquaux, Alexandre Gramfort, Vincent Michel, Bertrand Thirion, Olivier Grisel, Mathieu Blondel, Peter Prettenhofer, Ron Weiss, Vincent Dubourg, Jake Vanderplas, Alexandre Passos, David Cournapeau, Matthieu Brucher, Matthieu Perrot, and Édouard Duchesnay. Scikit-learn: machine learning in python. Journal of Machine Learning Research, 12(null):2825–2830, nov 2011.
Mohammad Hossein Rohban, Shantanu Singh, Xiaoyun Wu, Julia B Berthet, Mark-Anthony Bray, Yashaswi Shrestha, Xaralabos Varelas, Jesse S Boehm, and Anne E Carpenter. Systematic morphological profiling of human gene and allele function via Cell Painting. eLife, 6:e24060, March 2017. doi:10/ghkrp7.
Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, Philipp Angerer, Volker Bergen, Pierre Boyeau, Maren Büttner, Gokcen Eraslan, David Fischer, Max Frank, Justin Hong, Michal Klein, Marius Lange, Romain Lopez, Mohammad Lotfollahi, Malte D. Luecken, Fidel Ramirez, Jeffrey Regier, Sergei Rybakov, Anna C. Schaar, Valeh Valiollah Pour Amiri, Philipp Weiler, Galen Xing, Bonnie Berger, Dana Pe'er, Aviv Regev, Sarah A. Teichmann, Francesca Finotello, F. Alexander Wolf, Nir Yosef, Oliver Stegle, and Fabian J. Theis. The scverse project provides a computational ecosystem for single-cell omics data analysis. Nature Biotechnology, April 2023. URL: https://doi.org/10.1038/s41587-023-01733-8, doi:10.1038/s41587-023-01733-8.
F. Alexander Wolf, Philipp Angerer, and Fabian J. Theis. SCANPY: large-scale single-cell gene expression data analysis. Genome Biology, 19(1):15, February 2018. doi:10/gc22s9.