scmorph.io.make_AnnData

scmorph.io.make_AnnData(df, meta_cols=None, feature_delim='_')

Make annotated data matrix from DataFrame

Parameters:

• df (DataFrame) – Phenotypic measurements, e.g. derived from CellProfiler

• meta_cols (Optional[list[str]] (default: None)) – Names of metadata columns. None for automatic detection.

• feature_delim (str (default: '_')) – Character delimiting feature names

Return type:

AnnData

Returns:

Annotated data matrix